Yes, I hassle Whole Foods all the time. Everything has soy in it (tomato sauce in a jar - I couldn't find one w/out soy or canola oil). I think my WF has duck fat, but no goat. Ambiguously labelled eggs. GMO tofu - which I don't eat of course, but I'm looking out for those poor misguided vegans.
Honestly, I'm not sure what WF's mission is anymore. Is it to provide a real alternative to the common grocery store, or to pretend to provide one?