According to Mark's books and posts, all of those foods are primally allowed as part of 80/20.
But it's a matter of degree. It sounds as if you're eating far too much of them. You should be eating yogurt OR honey OR nuts, not all of them at the same time!
5'0" female, 44 years old. Started Primal October 31, 2011, at a skinny fat 111.5 lbs. Low weight: 99.5 lb on a fast. Gained to 109 on sugar cheat. Reset with 85P / 90C / 90F. Currently weaning off fat to 85P / 90C / 60F.
MY PRIMAL: I (try to) follow by-the-book primal as advocated by Mark Sisson, except for whey powder and a bit of cream. I advocate a two-month strict adjustment for newbies. But everybody is different and other need to tweak Primal to their own needs.