I only have experience with the thyroid/adrenals really. I mean my other hormones were off too, but as my thyroid and adrenals got better and I starting eating Primal, my other hormones seem to be coming back into line.
The armour sounds good. What kinds of vitamins are you on? Some hints... don't take other vitamins when you take your armour, they can conflict. Also don't have dairy within an hour of your thyroid meds. I'll try to remember some of the other stuff...
What are you doing for your adrenals?
Keep in mind that there will be some trial and error... you'll have to adjust meds occasionally and see what is and isn't working. So keeping track of your symptoms and how they feel will help.